1. IdeoViz::GSM733664_broadPeaks
    Data for vignette example 4.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14825 x 9
  2. IdeoViz::binned_fullGenome
    Data for example 3.
    rda| rds
    GRanges
  3. IdeoViz::binned_multiSeries
    Data for vignette example 1.
    rda| rds
    GRanges
  4. IdeoViz::binned_singleSeries
    Data for example 2.
    rda| rds
    GRanges
  5. IdeoViz::hg18_ideo
    Ideogram table for hg18
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  6. IdeoViz::wins
    Data for vignette example 1.
    rda| rds
    GRanges
  7. IdeoViz::wins
    Data for vignette example 1.
    rda| rds
    GRanges
  8. IdeoViz::wins_discrete
    Data for example 2.
    rda| rds
    GRanges
  9. IdeoViz::wins_discrete
    Data for example 2.
    rda| rds
    GRanges
  10. IdeoViz::wins_entiregenome
    Data for example 3.
    rda| rds
    GRanges
  11. IdeoViz::wins_entiregenome
    Data for example 3.
    rda| rds
    GRanges
  12. netDx::MB.pheno
    Sample metadata table for medulloblastoma dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|103 x 2
  13. netDx::cnv_GR
    CNV locations for breast cancer (subset)
    rda| rds
    GRanges
  14. netDx::cnv_TTstatus
    list of train/test statuses for CNV example
    csv| json| rda| rds
    list
  15. netDx::cnv_netPass
    Vector of pathways that pass class enrichment
    json| rda| rds
    list
  16. netDx::cnv_netScores
    List of pathway-level feature selection scores
    json| rda| rds
    list
  17. netDx::cnv_patientNetCount
    Binary matrix of patient occurrence in networks
    csv| json| rda| rds
    matrix|1229 x 1555
  18. netDx::cnv_pheno
    data.frame of patient labels and status for CNV example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1229 x 7
  19. netDx::confmat
    Confusion matrix example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 5
  20. netDx::featScores
    Demo feature-level scores from running feature selection on two-class problem
    csv| json| rda| rds
    list
  21. netDx::genes
    Table of gene definitions (small subsample of human genes)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 6
  22. netDx::modelres
    Sample output of getResults()
    json| rda| rds
    list
  23. netDx::npheno
    Toy sample metadata table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 2
  24. netDx::pathwayList
    Sample list of pathways
    json| rda| rds
    list
  25. netDx::pathway_GR
    List of genomic ranges mapped to pathways
    rda| rds
    list
  26. netDx::pheno
    Sample metadata table
    rda| rds
    DFrame
  27. netDx::pheno_full
    Subsample of TCGA breast cancer data used for netDx function examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|348 x 2
  28. netDx::predRes
    Example output of getPatientRankings, used to call labels for test patients.
    rda| rds
    list
  29. netDx::silh
    Toy network.
    json| rda| rds
    list
  30. netDx::toymodel
    Example model returned by a buildPredictor() call.
    json| rda| rds
    list
  31. netDx::xpr
    Example expression matrix
    csv| json| rda| rds
    matrix|300 x 525